Bianchimano L, De Luca MB, Borniego MB, Iglesias MJ, Casal JJ. Temperature regulation of auxin-related gene expression and its implications for plant growth. J Exp Bot. 2023 Jul 9:erad265. doi: 10.1093/jxb/erad265.

 Mateos, J.L* and Staiger, D, “Towards a systems view on RNA-binding proteins and associated RNAs in plants: Guilt by association”, The Plant Cell, 2022, koac345, https://doi.org/10.1093/plcell/koac345  *Corresponding author

 Mateos, J.L.;* Sanchez, S.;Legris, M.; Esteve,D.; Torchio,T.;Petrillo, E.; Seymour,D.; Weigel, D.; Alabadi, D.; and Yanovsky, M.J*. PICLN modulates alternative splicing and light/temperature responses in plants, Plant Physiology, 2022, kiac527, https://doi.org/10.1093/plphys/kiac527 *Corresponding author

Giustozzi M, Freytes SN, Jaskolowski A, Lichy M, Mateos J, Falcone Ferreyra ML, Rosano GL, Cerdán P, Casati P. Arabidopsis Mediator subunit 17 connects transcription with DNA repair after UV-B exposure. Plant J. 2022 Feb 27. doi: 10.1111/tpj.15722. Epub ahead of print. PMID: 35220621.

Terrile MC, Tebez NM, Colman SL, Mateos JL, Morato-López E, Sánchez-López N, Izquierdo-Álvarez A, Marina A, Calderón Villalobos LIA, Estelle M, Martínez-Ruiz A, Fiol DF, Casalongué CA, Iglesias MJ. S-Nitrosation of E3 Ubiquitin Ligase Complex Components Regulates Hormonal Signalings in Arabidopsis. Front Plant Sci. 2022 Feb 4;12:794582. doi: 10.3389/fpls.2021.794582. PMID: 35185952; PMCID: PMC8854210.

Rojas AML, Drusin SI, Chorostecki U, Mateos JL, Moro B, Bologna NG, Bresso EG, Schapire A, Rasia RM, Moreno DM, Palatnik JF. Identification of key sequence features required for microRNA biogenesis in plants. Nat Commun. 2020 Oct 21;11(1):5320. doi: 10.1038/s41467-020-19129-6. PMID: 33087730; PMCID: PMC7577975.

Richter R, Kinoshita A, Vincent C, Martinez-Gallegos R, Gao H, van Driel AD, Hyun Y, Mateos JL, Coupland G. Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications. PLoS Genet. 2019 Apr 4;15(4):e1008065. doi: 10.1371/journal.pgen.1008065. PMID: 30946745; PMCID: PMC6467423.

Tilmes V, Mateos JL, Madrid E, Vincent C, Severing E, Carrera E, López-Díaz I, Coupland G. Gibberellins Act Downstream of Arabis PERPETUAL FLOWERING1 to Accelerate Floral Induction during Vernalization. Plant Physiol. 2019 Jul;180(3):1549-1563. doi: 10.1104/pp.19.00021. Epub 2019 May 16. PMID: 31097676; PMCID: PMC6752923.

Osella AV, Mengarelli DA, Mateos J, Dong S, Yanovsky MJ, Balazadeh S, Valle EM, Zanor MI. FITNESS, a CCT domain-containing protein, deregulates reactive oxygen species levels and leads to fine-tuning trade-offs between reproductive success and defence responses in Arabidopsis. Plant Cell Environ. 2018 Oct;41(10):2328-2341. doi: 10.1111/pce.13354. Epub 2018 Jul 16. PMID: 29852518.

Mateos JL, de Leone MJ, Torchio J, Reichel M, Staiger D. Beyond Transcription: Fine-Tuning of Circadian Timekeeping by Post-Transcriptional Regulation. Genes (Basel). 2018 Dec 10;9(12):616. doi: 10.3390/genes9120616. PMID: 30544736; PMCID: PMC6315869.

Mateos JL, Tilmes V, Madrigal P, Severing E, Richter R, Rijkenberg CWM, Krajewski P, Coupland G. Divergence of regulatory networks governed by the orthologous transcription factors FLC and PEP1 in Brassicaceae species. Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):E11037-E11046. doi: 10.1073/pnas.1618075114. Epub 2017 Dec 4. PMID: 29203652; PMCID: PMC5754749.

Hernando CE, Garcia C, Mateos JL. Casting Away the Shadows: Elucidating the Role of Light-mediated Posttranscriptional Control in Plants. Photochem Photobiol. 2017 May;93(3):656-665. doi: 10.1111/php.12762. PMID: 28500720.

Mateos JL, Madrigal P, Tsuda K, Rawat V, Richter R, Romera-Branchat M, Fornara F, Schneeberger K, Krajewski P, Coupland G. Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis. Genome Biol. 2015 Feb 11;16(1):31. doi: 10.1186/s13059-015-0597-1. PMID: 25853185; PMCID: PMC4378019.

Iglesias FM, Bruera NA, Dergan-Dylon S, Marino-Buslje C, Lorenzi H, Mateos JL, Turck F, Coupland G, Cerdán PD. The arabidopsis DNA polymerase δ has a role in the deposition of transcriptionally active epigenetic marks, development and flowering. PLoS Genet. 2015 Feb 18;11(2):e1004975. doi: 10.1371/journal.pgen.1004975.

Willing EM, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJ, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, Mateos JL, Berns MC, Bujdoso N, Piofczyk T, de Lorenzo L, Barrero-Sicilia C, Mateos I, Piednoël M, Hagmann J, Chen-Min-Tao R, Iglesias-Fernández R, Schuster SC, Alonso-Blanco C, Roudier F, Carbonero P, Paz-Ares J, Davis SJ, Pecinka A, Quesneville H, Colot V, Lysak MA, Weigel D, Coupland G, Schneeberger K. Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nat Plants. 2015 Feb 2;1:14023. doi: 10.1038/nplants.2014.23. PMID: 27246759.

Andrés F, Porri A, Torti S, Mateos J, Romera-Branchat M, García-Martínez JL, Fornara F, Gregis V, Kater MM, Coupland G. SHORT VEGETATIVE PHASE reduces gibberellin biosynthesis at the Arabidopsis shoot apex to regulate the floral transition. Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):E2760-9. doi: 10.1073/pnas.1409567111. Epub 2014 Jun 16. PMID: 24979809; PMCID: PMC4084417.

Gregis V, Andrés F, Sessa A, Guerra RF, Simonini S, Mateos JL, Torti S, Zambelli F, Prazzoli GM, Bjerkan KN, Grini PE, Pavesi G, Colombo L, Coupland G, Kater MM. Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis. Genome Biol. 2013 Jun 11;14(6):R56. doi: 10.1186/gb-2013-14-6-r56. PMID: 23759218; PMCID: PMC3706845.

Albani MC, Castaings L, Wötzel S, Mateos JL, Wunder J, Wang R, Reymond M, Coupland G. PEP1 of Arabis alpina is encoded by two overlapping genes that contribute to natural genetic variation in perennial flowering. PLoS Genet. 2012;8(12):e1003130. doi: 10.1371/journal.pgen.1003130. Epub 2012 Dec 20. PMID: 23284298; PMCID: PMC3527215.

Rasia RM, Mateos J, Bologna NG, Burdisso P, Imbert L, Palatnik JF, Boisbouvier J. Structure and RNA interactions of the plant MicroRNA processing-associated protein HYL1. Biochemistry. 2010 Sep 28;49(38):8237-9. doi: 10.1021/bi100672x. PMID: 20735118.

Mateos JL, Bologna NG, Chorostecki U, Palatnik JF. Identification of microRNA processing determinants by random mutagenesis of Arabidopsis MIR172a precursor. Curr Biol. 2010 Jan 12;20(1):49-54. doi: 10.1016/j.cub.2009.10.072. Epub 2009 Dec 10. PMID: 20005105.

Bologna NG, Mateos JL, Bresso EG, Palatnik JF. A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159. EMBO J. 2009 Dec 2;28(23):3646-56. doi: 10.1038/emboj.2009.292. Epub 2009 Oct 8. PMID: 19816405; PMCID: PMC2790483.

Mateos JL, Luppi JP, Ogorodnikova OB, Sineshchekov VA, Yanovsky MJ, Braslavsky SE, Gärtner W, Casal JJ. Functional and biochemical analysis of the N-terminal domain of phytochrome A. J Biol Chem. 2006 Nov 10;281(45):34421-9. doi: 10.1074/jbc.M603538200. Epub 2006 Sep 11. PMID: 16966335.